Index

A

ADAS_CARBON_H (C macro) ADAS_LITHIUM_H (C macro) ADAS_NEON_H (C macro) ADAS_REACTION_H (C macro) ADASCarbonCX (C++ struct) ADASCarbonCX::ADASCarbonCX (C++ function) ADASCarbonCX::transform_impl (C++ function) ADASCarbonIonisation (C++ struct) ADASCarbonIonisation::ADASCarbonIonisation (C++ function) ADASCarbonIonisation::transform_impl (C++ function) ADASCarbonRecombination (C++ struct) ADASCarbonRecombination::ADASCarbonRecombination (C++ function) ADASCarbonRecombination::transform_impl (C++ function) ADASLithiumCX (C++ struct), [1] ADASLithiumCX::ADASLithiumCX (C++ function), [1] ADASLithiumCX::transform_impl (C++ function) ADASLithiumIonisation (C++ struct), [1] ADASLithiumIonisation::ADASLithiumIonisation (C++ function) ADASLithiumIonisation::transform_impl (C++ function) ADASLithiumRecombination (C++ struct), [1] ADASLithiumRecombination::ADASLithiumRecombination (C++ function), [1] ADASLithiumRecombination::transform_impl (C++ function) ADASNeonCX (C++ struct), [1] ADASNeonCX::ADASNeonCX (C++ function), [1]

ADASNeonCX::transform_impl (C++ function) ADASNeonIonisation (C++ struct), [1] ADASNeonIonisation::ADASNeonIonisation (C++ function) ADASNeonIonisation::transform_impl (C++ function) ADASNeonRecombination (C++ struct), [1] ADASNeonRecombination::ADASNeonRecombination (C++ function), [1] ADASNeonRecombination::transform_impl (C++ function) add (C++ function), [1] add_default_id (C++ function) AMJUEL_DATA_H (C macro) ANOMALOUS_DIFFUSION_H (C macro) AnomalousDiffusion (C++ struct), [1] AnomalousDiffusion::anomalous_chi (C++ member) AnomalousDiffusion::anomalous_D (C++ member) AnomalousDiffusion::anomalous_nu (C++ member) AnomalousDiffusion::anomalous_sheath_flux (C++ member) AnomalousDiffusion::AnomalousDiffusion (C++ function), [1] AnomalousDiffusion::diagnose (C++ member) AnomalousDiffusion::include_chi (C++ member) AnomalousDiffusion::include_D (C++ member) AnomalousDiffusion::include_nu (C++ member) AnomalousDiffusion::name (C++ member) AnomalousDiffusion::outputVars (C++ function), [1] AnomalousDiffusion::transform_impl (C++ function) applyLowerPermissions (C++ function)

B

BINORMAL_STPM_H (C macro) BinormalSTPM (C++ struct), [1] BinormalSTPM::BinormalSTPM (C++ function), [1] BinormalSTPM::chi (C++ member) BinormalSTPM::chi_Theta (C++ member) BinormalSTPM::D (C++ member) BinormalSTPM::D_Theta (C++ member) BinormalSTPM::diagnose (C++ member) BinormalSTPM::name (C++ member) BinormalSTPM::nu (C++ member) BinormalSTPM::nu_Theta (C++ member) BinormalSTPM::outputVars (C++ function), [1] BinormalSTPM::Theta (C++ member) BinormalSTPM::Theta_inv (C++ member) BinormalSTPM::transform_impl (C++ function) BOUT_ENUM_CLASS (C++ function), [1] BRAGINSKII_CONDUCTION_H (C macro) BRAGINSKII_ELECTRON_VISCOSITY_H (C macro) BRAGINSKII_FRICTION_H (C macro) BRAGINSKII_HEAT_EXCHANGE_H (C macro) BRAGINSKII_THERMAL_FORCE_H (C macro) BraginskiiCollisions (C++ struct), [1] BraginskiiCollisions::BraginskiiCollisions (C++ function), [1] BraginskiiCollisions::collide (C++ function) BraginskiiCollisions::collision_rates (C++ member) BraginskiiCollisions::diagnose (C++ member) BraginskiiCollisions::ei_multiplier (C++ member) BraginskiiCollisions::electron_electron (C++ member) BraginskiiCollisions::electron_ion (C++ member) BraginskiiCollisions::electron_neutral (C++ member) BraginskiiCollisions::ion_ion (C++ member) BraginskiiCollisions::ion_neutral (C++ member) BraginskiiCollisions::neutral_neutral (C++ member) BraginskiiCollisions::Nnorm (C++ member) BraginskiiCollisions::Omega_ci (C++ member) BraginskiiCollisions::outputVars (C++ function), [1] BraginskiiCollisions::rho_s0 (C++ member) BraginskiiCollisions::Tnorm (C++ member) BraginskiiCollisions::transform_impl (C++ function) BraginskiiConduction (C++ struct), [1] BraginskiiConduction::all_collision_names (C++ member) BraginskiiConduction::all_conduction_collisions_mode (C++ member) BraginskiiConduction::all_diagnose (C++ member) BraginskiiConduction::all_flow_ylow_conduction (C++ member) BraginskiiConduction::all_kappa_coefficient (C++ member) BraginskiiConduction::all_kappa_limit_alpha (C++ member) BraginskiiConduction::all_kappa_par (C++ member) BraginskiiConduction::all_nu (C++ member) BraginskiiConduction::BraginskiiConduction (C++ function), [1] BraginskiiConduction::outputVars (C++ function), [1] BraginskiiConduction::transform_impl (C++ function)

BraginskiiElectronViscosity (C++ struct), [1] BraginskiiElectronViscosity::BraginskiiElectronViscosity (C++ function), [1] BraginskiiElectronViscosity::diagnose (C++ member) BraginskiiElectronViscosity::eta_limit_alpha (C++ member) BraginskiiElectronViscosity::outputVars (C++ function), [1] BraginskiiElectronViscosity::transform_impl (C++ function) BraginskiiElectronViscosity::viscosity (C++ member) BraginskiiFriction (C++ struct), [1] BraginskiiFriction::BraginskiiFriction (C++ function), [1] BraginskiiFriction::diagnose (C++ member) BraginskiiFriction::friction_energy_channels (C++ member) BraginskiiFriction::frictional_heating (C++ member) BraginskiiFriction::momentum_channels (C++ member) BraginskiiFriction::outputVars (C++ function), [1] BraginskiiFriction::transform_impl (C++ function) BraginskiiHeatExchange (C++ struct), [1] BraginskiiHeatExchange::BraginskiiHeatExchange (C++ function), [1] BraginskiiHeatExchange::diagnose (C++ member) BraginskiiHeatExchange::energy_channels (C++ member) BraginskiiHeatExchange::outputVars (C++ function), [1] BraginskiiHeatExchange::transform_impl (C++ function) BraginskiiIonViscosity (C++ struct), [1] BraginskiiIonViscosity::bounce_frequency (C++ member) BraginskiiIonViscosity::bounce_frequency_epsilon (C++ member) BraginskiiIonViscosity::bounce_frequency_q95 (C++ member) BraginskiiIonViscosity::bounce_frequency_R (C++ member) BraginskiiIonViscosity::BraginskiiIonViscosity (C++ function), [1] BraginskiiIonViscosity::collision_names (C++ member) BraginskiiIonViscosity::Curlb_B (C++ member) BraginskiiIonViscosity::density_floor (C++ member) BraginskiiIonViscosity::diagnose (C++ member) BraginskiiIonViscosity::diagnostics (C++ member) BraginskiiIonViscosity::Diagnostics (C++ struct) BraginskiiIonViscosity::Diagnostics::bounce_factor (C++ member) BraginskiiIonViscosity::Diagnostics::DivJ (C++ member) BraginskiiIonViscosity::Diagnostics::nu_star (C++ member) BraginskiiIonViscosity::Diagnostics::Pi_cipar (C++ member) BraginskiiIonViscosity::Diagnostics::Pi_ciperp (C++ member) BraginskiiIonViscosity::eta_limit_alpha (C++ member) BraginskiiIonViscosity::nu (C++ member) BraginskiiIonViscosity::outputVars (C++ function), [1] BraginskiiIonViscosity::parallel (C++ member) BraginskiiIonViscosity::perpendicular (C++ member) BraginskiiIonViscosity::transform_impl (C++ function) BraginskiiIonViscosity::viscosity_collisions_mode (C++ member) BraginskiiThermalForce (C++ struct), [1] BraginskiiThermalForce::BraginskiiThermalForce (C++ function) BraginskiiThermalForce::electron_ion (C++ member) BraginskiiThermalForce::first_time (C++ member) BraginskiiThermalForce::ion_ion (C++ member) BraginskiiThermalForce::override_ion_mass_restrictions (C++ member) BraginskiiThermalForce::transform_impl (C++ function)

C

calculateGradient (C++ function) carbon_ionisation_energy (C++ member) carbon_species_name (C++ member) carbon_species_name<0> (C++ member) carbon_species_name<1> (C++ member) cellAverage (C++ function) cellLeft (C++ function) cellRight (C++ function) clamp (C++ function) CLASSICAL_DIFFUSION_H (C macro) ClassicalDiffusion (C++ struct) ClassicalDiffusion::Bsq (C++ member) ClassicalDiffusion::ClassicalDiffusion (C++ function) ClassicalDiffusion::cls_mf_perp_xlow (C++ member) ClassicalDiffusion::cls_mf_perp_ylow (C++ member) ClassicalDiffusion::cls_nef_perp_xlow (C++ member) ClassicalDiffusion::cls_nef_perp_ylow (C++ member) ClassicalDiffusion::cls_pf_perp_xlow (C++ member) ClassicalDiffusion::cls_pf_perp_ylow (C++ member) ClassicalDiffusion::cls_tef_perp_xlow (C++ member) ClassicalDiffusion::cls_tef_perp_ylow (C++ member) ClassicalDiffusion::custom_D (C++ member) ClassicalDiffusion::diagnose (C++ member) ClassicalDiffusion::Dn (C++ member) ClassicalDiffusion::outputVars (C++ function) ClassicalDiffusion::transform_impl (C++ function) COLLISIONS_H (C macro) collisionSpeciesMatch (C++ function) Component (C++ struct), [1]

Component::Component (C++ function), [1] Component::create (C++ function), [1] Component::declareAllSpecies (C++ function), [1] Component::finally (C++ function), [1] Component::outputVars (C++ function), [1] Component::precon (C++ function), [1] Component::restartVars (C++ function), [1] Component::setPermissions (C++ function), [1], [2] Component::state_variable_access (C++ member), [1] Component::substitutePermissions (C++ function), [1] Component::transform (C++ function), [1] Component::transform_impl (C++ function), [1] Component::~Component (C++ function) COMPONENT_SCHEDULER_H (C macro) ComponentFactory (C++ class) ComponentFactory::default_type (C++ member) ComponentFactory::option_name (C++ member) ComponentFactory::section_name (C++ member) ComponentFactory::type_name (C++ member) ComponentScheduler (C++ class), [1] ComponentScheduler::components (C++ member) ComponentScheduler::ComponentScheduler (C++ function) ComponentScheduler::create (C++ function), [1] ComponentScheduler::outputVars (C++ function), [1] ComponentScheduler::precon (C++ function), [1] ComponentScheduler::restartVars (C++ function), [1] ComponentScheduler::transform (C++ function), [1] containsAnySubstring (C++ function) count_species (C++ function) CX_REACTION_H (C macro)

D

D4DX4_FV_Index (C++ function), [1] D4DZ4_Index (C++ function), [1] default_data_ids (C++ member) detachment_controller_H (C macro) DetachmentController (C++ struct) DetachmentController::actuator (C++ member) DetachmentController::buffer_size (C++ member) DetachmentController::change_in_control (C++ member) DetachmentController::change_in_derivative (C++ member) DetachmentController::change_in_error (C++ member) DetachmentController::change_in_time (C++ member) DetachmentController::connection_length (C++ member) DetachmentController::control (C++ member) DetachmentController::control_mode (C++ member) DetachmentController::control_offset (C++ member) DetachmentController::control_particles (C++ member) DetachmentController::control_power (C++ member) DetachmentController::controller_gain (C++ member) DetachmentController::debug (C++ member) DetachmentController::derivative (C++ member) DetachmentController::derivative_term (C++ member) DetachmentController::derivative_time (C++ member) DetachmentController::detachment_front_location (C++ member) DetachmentController::detachment_front_setpoint (C++ member) DetachmentController::detachment_source_feedback (C++ member) DetachmentController::DetachmentController (C++ function) DetachmentController::diagnose (C++ member) DetachmentController::error (C++ member) DetachmentController::error_buffer (C++ member) DetachmentController::error_integral (C++ member) DetachmentController::first_step (C++ member) DetachmentController::ignore_restart (C++ member) DetachmentController::initialise (C++ member) DetachmentController::integral_term (C++ member) DetachmentController::integral_time (C++ member) DetachmentController::maxval_for_source_multiplier (C++ member) DetachmentController::min_error_for_change (C++ member) DetachmentController::min_time_for_change (C++ member) DetachmentController::minval_for_source_multiplier (C++ member) DetachmentController::neutral_species (C++ member)

DetachmentController::number_of_crossings (C++ member) DetachmentController::outputVars (C++ function) DetachmentController::previous_control (C++ member) DetachmentController::previous_derivative (C++ member) DetachmentController::previous_error (C++ member) DetachmentController::previous_time (C++ member) DetachmentController::proportional_term (C++ member) DetachmentController::reset_integral_on_first_crossing (C++ member) DetachmentController::response_sign (C++ member) DetachmentController::restartVars (C++ function) DetachmentController::scaling_factors_list (C++ member) DetachmentController::settling_time (C++ member) DetachmentController::source_conversion (C++ member) DetachmentController::source_shape (C++ member) DetachmentController::source_units (C++ member) DetachmentController::species_for_source_shape (C++ member) DetachmentController::species_list (C++ member) DetachmentController::time (C++ member) DetachmentController::time_buffer (C++ member) DetachmentController::time_normalisation (C++ member) DetachmentController::transform_impl (C++ function) DetachmentController::velocity_form (C++ member) DiagnosticTransformerType (C++ type) DIAMAGNETIC_DRIFT_H (C macro) DiamagneticDrift (C++ struct), [1] DiamagneticDrift::bndry_flux (C++ member) DiamagneticDrift::Curlb_B (C++ member) DiamagneticDrift::diamag_form (C++ member) DiamagneticDrift::DiamagneticDrift (C++ function) DiamagneticDrift::transform_impl (C++ function) Div_a_Grad_perp_flows (C++ function), [1] Div_a_Grad_perp_nonorthog (C++ function), [1] Div_a_Grad_perp_upwind (C++ function), [1] Div_a_Grad_perp_upwind_flows (C++ function), [1] Div_n_bxGrad_f_B_XPPM (C++ function), [1] Div_n_g_bxGrad_f_B_XZ (C++ function), [1] Div_par_diffusion_index (C++ function), [1] Div_par_K_Grad_par_mod (C++ function), [1] Div_Perp_Lap_FV_Index (C++ function), [1] Div_Z_FV_Index (C++ function), [1]

E

Electromagnetic (C++ struct), [1] Electromagnetic::Ajpar (C++ member) Electromagnetic::alpha_em (C++ member) Electromagnetic::Apar (C++ member) Electromagnetic::apar_boundary_timescale (C++ member) Electromagnetic::Apar_flutter (C++ member) Electromagnetic::aparSolver (C++ member) Electromagnetic::beta_em (C++ member) Electromagnetic::const_gradient (C++ member) Electromagnetic::diagnose (C++ member) Electromagnetic::Electromagnetic (C++ function), [1] Electromagnetic::last_time (C++ member) Electromagnetic::magnetic_flutter (C++ member) Electromagnetic::outputVars (C++ function), [1] Electromagnetic::restartVars (C++ function), [1] Electromagnetic::transform_impl (C++ function) ELECTROMAGNETIC_H (C macro) ELECTRON_FORCE_BALANCE (C macro) ElectronForceBalance (C++ struct), [1] ElectronForceBalance::diagnose (C++ member) ElectronForceBalance::ElectronForceBalance (C++ function) ElectronForceBalance::Epar (C++ member) ElectronForceBalance::outputVars (C++ function), [1] ElectronForceBalance::transform_impl (C++ function) EVOLVE_DENSITY_H (C macro) EVOLVE_ENERGY_H (C macro) EVOLVE_MOMENTUM_H (C macro) EVOLVE_PRESSURE_H (C macro) EvolveDensity (C++ struct), [1] EvolveDensity::AA (C++ member) EvolveDensity::bndry_flux (C++ member) EvolveDensity::charge (C++ member) EvolveDensity::density_floor (C++ member) EvolveDensity::diagnose (C++ member) EvolveDensity::evolve_log (C++ member) EvolveDensity::EvolveDensity (C++ function), [1] EvolveDensity::final_source (C++ member) EvolveDensity::finally (C++ function), [1] EvolveDensity::flow_xlow (C++ member) EvolveDensity::flow_ylow (C++ member) EvolveDensity::hyper_z (C++ member) EvolveDensity::logN (C++ member) EvolveDensity::low_n_diffuse (C++ member) EvolveDensity::low_n_diffuse_perp (C++ member) EvolveDensity::low_p_diffuse_perp (C++ member) EvolveDensity::N (C++ member) EvolveDensity::name (C++ member) EvolveDensity::neumann_boundary_average_z (C++ member) EvolveDensity::outputVars (C++ function), [1] EvolveDensity::poloidal_flows (C++ member) EvolveDensity::pressure_floor (C++ member) EvolveDensity::Sn (C++ member) EvolveDensity::source (C++ member) EvolveDensity::source_normalisation (C++ member) EvolveDensity::source_only_in_core (C++ member) EvolveDensity::source_prefactor_function (C++ member) EvolveDensity::source_time_dependent (C++ member) EvolveDensity::time_normalisation (C++ member) EvolveDensity::transform_impl (C++ function) EvolveDensity::updateSource (C++ function) EvolveEnergy (C++ struct), [1] EvolveEnergy::adiabatic_index (C++ member) EvolveEnergy::bndry_flux (C++ member) EvolveEnergy::Cv (C++ member) EvolveEnergy::density_floor (C++ member) EvolveEnergy::diagnose (C++ member) EvolveEnergy::E (C++ member) EvolveEnergy::enable_precon (C++ member) EvolveEnergy::evolve_log (C++ member) EvolveEnergy::EvolveEnergy (C++ function), [1] EvolveEnergy::finally (C++ function), [1] EvolveEnergy::flow_xlow (C++ member) EvolveEnergy::flow_ylow (C++ member) EvolveEnergy::hyper_z (C++ member) EvolveEnergy::logE (C++ member) EvolveEnergy::N (C++ member) EvolveEnergy::name (C++ member)

EvolveEnergy::neumann_boundary_average_z (C++ member) EvolveEnergy::nu (C++ member) EvolveEnergy::outputVars (C++ function), [1] EvolveEnergy::P (C++ member) EvolveEnergy::poloidal_flows (C++ member) EvolveEnergy::precon (C++ function), [1] EvolveEnergy::Se (C++ member) EvolveEnergy::source (C++ member) EvolveEnergy::T (C++ member) EvolveEnergy::thermal_conduction (C++ member) EvolveEnergy::transform_impl (C++ function) EvolveMomentum (C++ struct), [1] EvolveMomentum::bndry_flux (C++ member) EvolveMomentum::density_floor (C++ member) EvolveMomentum::diagnose (C++ member) EvolveMomentum::EvolveMomentum (C++ function) EvolveMomentum::finally (C++ function), [1] EvolveMomentum::fix_momentum_boundary_flux (C++ member) EvolveMomentum::flow_xlow (C++ member) EvolveMomentum::flow_ylow (C++ member) EvolveMomentum::hyper_z (C++ member) EvolveMomentum::low_n_diffuse_perp (C++ member) EvolveMomentum::low_p_diffuse_perp (C++ member) EvolveMomentum::momentum_source (C++ member) EvolveMomentum::name (C++ member) EvolveMomentum::NV (C++ member) EvolveMomentum::NV_err (C++ member) EvolveMomentum::NV_solver (C++ member) EvolveMomentum::outputVars (C++ function), [1] EvolveMomentum::poloidal_flows (C++ member) EvolveMomentum::pressure_floor (C++ member) EvolveMomentum::transform_impl (C++ function) EvolveMomentum::V (C++ member) EvolvePressure (C++ struct), [1] EvolvePressure::bndry_flux (C++ member) EvolvePressure::damp_p_nt (C++ member) EvolvePressure::density_floor (C++ member) EvolvePressure::diagnose (C++ member) EvolvePressure::E_PdivV (C++ member) EvolvePressure::E_VgradP (C++ member) EvolvePressure::enable_precon (C++ member) EvolvePressure::evolve_log (C++ member) EvolvePressure::EvolvePressure (C++ function), [1] EvolvePressure::final_source (C++ member) EvolvePressure::finally (C++ function), [1] EvolvePressure::fix_momentum_boundary_flux (C++ member) EvolvePressure::flow_xlow (C++ member) EvolvePressure::flow_ylow (C++ member) EvolvePressure::flow_ylow_advection (C++ member) EvolvePressure::flow_ylow_viscous_heating (C++ member) EvolvePressure::hyper_z (C++ member) EvolvePressure::hyper_z_T (C++ member) EvolvePressure::logP (C++ member) EvolvePressure::low_n_diffuse_perp (C++ member) EvolvePressure::low_p_diffuse_perp (C++ member) EvolvePressure::low_T_diffuse_perp (C++ member) EvolvePressure::N (C++ member) EvolvePressure::name (C++ member) EvolvePressure::neumann_boundary_average_z (C++ member) EvolvePressure::numerical_viscous_heating (C++ member) EvolvePressure::outputVars (C++ function), [1] EvolvePressure::P (C++ member) EvolvePressure::p_div_v (C++ member) EvolvePressure::poloidal_flows (C++ member) EvolvePressure::precon (C++ function), [1] EvolvePressure::pressure_floor (C++ member) EvolvePressure::source (C++ member) EvolvePressure::source_normalisation (C++ member) EvolvePressure::source_prefactor_function (C++ member) EvolvePressure::source_time_dependent (C++ member) EvolvePressure::Sp (C++ member) EvolvePressure::Sp_nvh (C++ member) EvolvePressure::T (C++ member) EvolvePressure::temperature_floor (C++ member) EvolvePressure::thermal_conduction (C++ member) EvolvePressure::time_normalisation (C++ member) EvolvePressure::transform_impl (C++ function)

F

firstArg (C++ function) FIXED_DENSITY_H (C macro) FIXED_FRACTION_IONS_H (C macro) FIXED_FRACTION_RADIATION_H (C macro) FIXED_TEMPERATURE_H (C macro) FIXED_VELOCITY_H (C macro) FixedDensity (C++ struct), [1] FixedDensity::AA (C++ member) FixedDensity::charge (C++ member) FixedDensity::FixedDensity (C++ function), [1] FixedDensity::N (C++ member) FixedDensity::name (C++ member) FixedDensity::outputVars (C++ function), [1] FixedDensity::transform_impl (C++ function) FixedFractionIons (C++ struct), [1] FixedFractionIons::FixedFractionIons (C++ function), [1] FixedFractionIons::fractions (C++ member) FixedFractionIons::transform_impl (C++ function) FixedFractionRadiation (C++ struct) FixedFractionRadiation::cooling (C++ member) FixedFractionRadiation::diagnose (C++ member) FixedFractionRadiation::FixedFractionRadiation (C++ function) FixedFractionRadiation::fraction (C++ member) FixedFractionRadiation::FreqNorm (C++ member) FixedFractionRadiation::name (C++ member) FixedFractionRadiation::Nnorm (C++ member) FixedFractionRadiation::no_core_radiation (C++ member) FixedFractionRadiation::outputVars (C++ function)

FixedFractionRadiation::radiation (C++ member) FixedFractionRadiation::radiation_multiplier (C++ member) FixedFractionRadiation::Tnorm (C++ member) FixedFractionRadiation::transform_impl (C++ function) FixedTemperature (C++ struct), [1] FixedTemperature::diagnose (C++ member) FixedTemperature::FixedTemperature (C++ function), [1] FixedTemperature::name (C++ member) FixedTemperature::outputVars (C++ function), [1] FixedTemperature::P (C++ member) FixedTemperature::T (C++ member) FixedTemperature::transform_impl (C++ function) FixedVelocity (C++ struct), [1] FixedVelocity::FixedVelocity (C++ function) FixedVelocity::name (C++ member) FixedVelocity::outputVars (C++ function), [1] FixedVelocity::transform_impl (C++ function) FixedVelocity::V (C++ member) floor (C++ function) fmt::formatter<Permissions> (C++ struct) fmt::formatter<Permissions>::format (C++ function) format_as (C++ function) FV (C++ type) FV::Div_a_Grad_perp_limit (C++ function) FV::Div_par_fvv (C++ function) FV::Div_par_fvv_heating (C++ function) FV::Div_par_mod (C++ function) FV::Superbee (C++ struct) FV::Superbee::operator() (C++ function)

G

generate_default_data_ids_map (C++ function) get (C++ function), [1] get_default_data_id (C++ function) get_default_data_ids_str (C++ function) get_json_db_dir (C++ function), [1] GET_NOBOUNDARY (C macro) GET_VALUE (C macro) getNoBoundary (C++ function), [1] getNonFinal (C++ function), [1] GuardedOptions (C++ class), [1] GuardedOptions::get (C++ function), [1] GuardedOptions::getChildren (C++ function) GuardedOptions::getHighestPermission (C++ function) GuardedOptions::GetRef (C++ function), [1]

GuardedOptions::getWritable (C++ function), [1] GuardedOptions::GuardedOptions (C++ function), [1], [2], [3] GuardedOptions::isSection (C++ function), [1], [2] GuardedOptions::isSet (C++ function), [1], [2] GuardedOptions::name (C++ function) GuardedOptions::operator!= (C++ function) GuardedOptions::operator== (C++ function) GuardedOptions::operator[] (C++ function), [1], [2] GuardedOptions::options (C++ member) GuardedOptions::permissions (C++ member) GuardedOptions::unread_variables (C++ member) GuardedOptions::unreadItems (C++ function), [1] GuardedOptions::unwritten_variables (C++ member) GuardedOptions::unwrittenItems (C++ function), [1]

H

hermes (C++ type), [1], [2], [3], [4], [5], [6], [7], [8], [9] hermes::AmjuelData (C++ class) hermes::AmjuelData::AmjuelData (C++ function) hermes::AmjuelData::eval_sigma_v_ET_impl (C++ function) hermes::AmjuelData::eval_sigma_v_nT_impl (C++ function) hermes::AmjuelData::eval_sigma_v_T_impl (C++ function) hermes::AmjuelData::eval_sigma_vE_nT_impl (C++ function) hermes::CellData (C++ struct) hermes::CellData::CellData (C++ function), [1] hermes::CellData::centre (C++ member) hermes::CellData::left (C++ member) hermes::CellData::right (C++ member) hermes::CXReaction (C++ struct) hermes::CXReaction::CXReaction (C++ function), [1] hermes::CXReaction::has_neutral_reactant (C++ member) hermes::CXReaction::no_neutral_cx_mom_gain (C++ member) hermes::CXReaction::p1 (C++ member) hermes::CXReaction::p2 (C++ member) hermes::CXReaction::r1 (C++ member) hermes::CXReaction::r2 (C++ member) hermes::CXReaction::set_species_and_validate (C++ function) hermes::CXReaction::transform_additional (C++ function) hermes::dependent_false (C++ member) hermes::EnableIfGuardedOption (C++ type) hermes::eval_amjuel_nT_fit (C++ function) hermes::eval_amjuel_T_fit (C++ function) hermes::IznReaction (C++ struct) hermes::IznReaction::IznReaction (C++ function), [1] hermes::IznRecReaction (C++ struct) hermes::IznRecReaction::e_energy_loss_data (C++ member) hermes::IznRecReaction::heavy_collfreq_species (C++ member) hermes::IznRecReaction::heavy_product (C++ member) hermes::IznRecReaction::heavy_reactant (C++ member) hermes::IznRecReaction::IznRecReaction (C++ function) hermes::IznRecReaction::short_reaction_type (C++ member) hermes::IznRecReaction::transform_additional (C++ function) hermes::OneDRateFunc (C++ type) hermes::OPTYPE (C++ type) hermes::RateData (C++ struct) hermes::RateData::coll_freq (C++ function) hermes::RateData::collision_frequencies (C++ member) hermes::RateData::rate (C++ member) hermes::RateFuncVariant (C++ type) hermes::RateHelper (C++ struct) hermes::RateHelper::add_rate_param (C++ function) hermes::RateHelper::calc_rates (C++ function) hermes::RateHelper::calc_Teff (C++ function) hermes::RateHelper::compute_collision_freq_density (C++ function) hermes::RateHelper::compute_mass_actions (C++ function)

hermes::RateHelper::compute_rate_param (C++ function) hermes::RateHelper::num_reactants (C++ member) hermes::RateHelper::rate_calc_func (C++ member) hermes::RateHelper::rate_params (C++ member) hermes::RateHelper::RateHelper (C++ function) hermes::RateHelper::reactant_densities (C++ member) hermes::RateHelper::reactant_names (C++ member) hermes::RateHelper::region (C++ member) hermes::RateHelper::Teff_storage (C++ member) hermes::Reaction (C++ struct) hermes::Reaction::add_diagnostic (C++ function) hermes::Reaction::diagnose (C++ member) hermes::Reaction::diagnostics (C++ member) hermes::Reaction::do_parallel_averaging (C++ member) hermes::Reaction::energy_channels (C++ member) hermes::Reaction::FreqNorm (C++ member) hermes::Reaction::get_reaction_settings (C++ function) hermes::Reaction::init_channel_weights (C++ function) hermes::Reaction::momentum_channels (C++ member) hermes::Reaction::name (C++ member) hermes::Reaction::Nnorm (C++ member) hermes::Reaction::outputVars (C++ function) hermes::Reaction::parser (C++ member) hermes::Reaction::pfactors (C++ member) hermes::Reaction::radiation_multiplier (C++ member) hermes::Reaction::rate_data (C++ member) hermes::Reaction::rate_multiplier (C++ member) hermes::Reaction::Reaction (C++ function) hermes::Reaction::set_energy_channel_weight (C++ function) hermes::Reaction::set_momentum_channel_weight (C++ function) hermes::Reaction::Tnorm (C++ member) hermes::Reaction::transform_additional (C++ function) hermes::Reaction::transform_impl (C++ function) hermes::Reaction::units (C++ member) hermes::Reaction::update_source (C++ function), [1] hermes::Reaction::zero_diagnostics (C++ function) hermes::ReactionBase (C++ struct) hermes::ReactionBase::incremented_instance_num (C++ function) hermes::ReactionBase::inst_num (C++ member) hermes::ReactionBase::instance_num_ref (C++ function) hermes::ReactionBase::ReactionBase (C++ function) hermes::ReactionBase::reset_instance_counter (C++ function) hermes::RecReaction (C++ struct) hermes::RecReaction::RecReaction (C++ function), [1] hermes::Teff_name (C++ member) hermes::TwoDRateFunc (C++ type) HERMES_COMPONENT_H (C macro) HERMES_UTILS_H (C macro) hermesDataInvalid (C++ function), [1], [2]

I

identifySpeciesType (C++ function) identity (C++ function) indexAt (C++ function) INTEGRATE_H (C macro) ION_VISCOSITY_H (C macro) Ionisation (C++ class) Ionisation::Eionize (C++ member) Ionisation::FreqNorm (C++ member) Ionisation::Ionisation (C++ function) Ionisation::Nnorm (C++ member) Ionisation::Tnorm (C++ member) Ionisation::transform_impl (C++ function) IONISATION_H (C macro) IS_SET (C macro)

IS_SET_NOBOUNDARY (C macro) Isothermal (C++ struct), [1] Isothermal::diagnose (C++ member) Isothermal::Isothermal (C++ function) Isothermal::name (C++ member) Isothermal::outputVars (C++ function), [1] Isothermal::P (C++ member) Isothermal::T (C++ member) Isothermal::transform_impl (C++ function) ISOTHERMAL_H (C macro) isSetFinal (C++ function), [1], [2], [3] isSetFinalNoBoundary (C++ function), [1], [2], [3] isSetRecursive (C++ function) IZN_REC_REACTION_H (C macro)

L

Laplace_FV (C++ function), [1] lithium_ionisation_energy (C++ member) lithium_species_name (C++ member)

lithium_species_name<0> (C++ member) lithium_species_name<1> (C++ member) lithium_species_name<3> (C++ member)

M

MC (C++ function)

minmod (C++ function) momentumCoefficient (C++ function), [1]

N

negate (C++ function) neon_ionisation_energy (C++ member) neon_species_name (C++ member) neon_species_name<0> (C++ member) neon_species_name<10> (C++ member) neon_species_name<1> (C++ member) NEUTRAL_BOUNDARY_H (C macro) NEUTRAL_FULL_VELOCITY_H (C macro) NEUTRAL_MIXED_H (C macro) NEUTRAL_PARALLEL_DIFFUSION_H (C macro) NeutralBoundary (C++ struct), [1] NeutralBoundary::diagnose (C++ member) NeutralBoundary::lower_y (C++ member) NeutralBoundary::name (C++ member) NeutralBoundary::NeutralBoundary (C++ function) NeutralBoundary::outputVars (C++ function), [1] NeutralBoundary::pfr (C++ member) NeutralBoundary::pfr_energy_refl_factor (C++ member) NeutralBoundary::pfr_fast_refl_fraction (C++ member) NeutralBoundary::sol (C++ member) NeutralBoundary::sol_energy_refl_factor (C++ member) NeutralBoundary::sol_fast_refl_fraction (C++ member) NeutralBoundary::target_energy_refl_factor (C++ member) NeutralBoundary::target_energy_source (C++ member) NeutralBoundary::target_fast_refl_fraction (C++ member) NeutralBoundary::Tnorm (C++ member) NeutralBoundary::transform_impl (C++ function) NeutralBoundary::upper_y (C++ member) NeutralBoundary::wall_energy_source (C++ member) NeutralFullVelocity (C++ struct) NeutralFullVelocity::AA (C++ member) NeutralFullVelocity::adiabatic_index (C++ member) NeutralFullVelocity::collision_names (C++ member) NeutralFullVelocity::constant_transport_coef (C++ member) NeutralFullVelocity::coord (C++ member) NeutralFullVelocity::curved_torus (C++ member) NeutralFullVelocity::density_floor (C++ member) NeutralFullVelocity::density_source (C++ member) NeutralFullVelocity::diagnose (C++ member) NeutralFullVelocity::diffusion_collisions_mode (C++ member) NeutralFullVelocity::diffusion_limit (C++ member) NeutralFullVelocity::Dnn (C++ member) NeutralFullVelocity::eta_n (C++ member) NeutralFullVelocity::finally (C++ function) NeutralFullVelocity::flux_limit (C++ member) NeutralFullVelocity::kappa_n (C++ member) NeutralFullVelocity::momentum_advection (C++ member) NeutralFullVelocity::name (C++ member) NeutralFullVelocity::neutral_conduction (C++ member) NeutralFullVelocity::neutral_gamma (C++ member) NeutralFullVelocity::neutral_lmax (C++ member) NeutralFullVelocity::neutral_viscosity (C++ member) NeutralFullVelocity::NeutralFullVelocity (C++ function) NeutralFullVelocity::Nn2D (C++ member) NeutralFullVelocity::nu (C++ member) NeutralFullVelocity::output_ddt (C++ member) NeutralFullVelocity::outputVars (C++ function) NeutralFullVelocity::Pn2D (C++ member) NeutralFullVelocity::pressure_floor (C++ member) NeutralFullVelocity::pressure_source (C++ member) NeutralFullVelocity::Rxy (C++ member) NeutralFullVelocity::sigma_Bp (C++ member) NeutralFullVelocity::Sn (C++ member) NeutralFullVelocity::Snv (C++ member) NeutralFullVelocity::Sp (C++ member) NeutralFullVelocity::temperature_floor (C++ member) NeutralFullVelocity::Tn2D (C++ member) NeutralFullVelocity::toroidal_flow (C++ member) NeutralFullVelocity::transform_impl (C++ function) NeutralFullVelocity::Txr (C++ member) NeutralFullVelocity::Txz (C++ member) NeutralFullVelocity::Tyr (C++ member) NeutralFullVelocity::Tyz (C++ member) NeutralFullVelocity::Urx (C++ member) NeutralFullVelocity::Ury (C++ member) NeutralFullVelocity::Uzx (C++ member) NeutralFullVelocity::Uzy (C++ member) NeutralFullVelocity::Vn2D (C++ member) NeutralFullVelocity::Vn2D_contravariant (C++ member) NeutralFullVelocity::Vnpar (C++ member) NeutralFullVelocity::zero_timederivs (C++ member) NeutralMixed (C++ struct), [1] NeutralMixed::AA (C++ member) NeutralMixed::collision_names (C++ member) NeutralMixed::collisionality_override (C++ member) NeutralMixed::density_floor (C++ member) NeutralMixed::density_norm (C++ member) NeutralMixed::density_source (C++ member) NeutralMixed::diagnose (C++ member)

NeutralMixed::diffusion_collisions_mode (C++ member) NeutralMixed::diffusion_limit (C++ member) NeutralMixed::Dnn (C++ member) NeutralMixed::DnnNn (C++ member) NeutralMixed::DnnNVn (C++ member) NeutralMixed::DnnPn (C++ member) NeutralMixed::DnnTn (C++ member) NeutralMixed::ef_adv_par_ylow (C++ member) NeutralMixed::ef_adv_perp_xlow (C++ member) NeutralMixed::ef_adv_perp_ylow (C++ member) NeutralMixed::ef_cond_par_ylow (C++ member) NeutralMixed::ef_cond_perp_xlow (C++ member) NeutralMixed::ef_cond_perp_ylow (C++ member) NeutralMixed::eta_n (C++ member) NeutralMixed::evolve_momentum (C++ member) NeutralMixed::finally (C++ function), [1] NeutralMixed::flux_limit (C++ member) NeutralMixed::freeze_low_density (C++ member) NeutralMixed::inv (C++ member) NeutralMixed::kappa_n (C++ member) NeutralMixed::lax_flux (C++ member) NeutralMixed::logPnlim (C++ member) NeutralMixed::mf_adv_par_ylow (C++ member) NeutralMixed::mf_adv_perp_xlow (C++ member) NeutralMixed::mf_adv_perp_ylow (C++ member) NeutralMixed::mf_visc_par_ylow (C++ member) NeutralMixed::mf_visc_perp_xlow (C++ member) NeutralMixed::mf_visc_perp_ylow (C++ member) NeutralMixed::momentum_norm (C++ member) NeutralMixed::momentum_source (C++ member) NeutralMixed::name (C++ member) NeutralMixed::neutral_conduction (C++ member) NeutralMixed::neutral_lmax (C++ member) NeutralMixed::neutral_viscosity (C++ member) NeutralMixed::NeutralMixed (C++ function), [1] NeutralMixed::Nn (C++ member) NeutralMixed::Nnlim (C++ member) NeutralMixed::nonorthogonal_operators (C++ member) NeutralMixed::normalise_sources (C++ member) NeutralMixed::nu (C++ member) NeutralMixed::NVn (C++ member) NeutralMixed::output_ddt (C++ member) NeutralMixed::outputVars (C++ function), [1] NeutralMixed::pf_adv_par_ylow (C++ member) NeutralMixed::pf_adv_perp_xlow (C++ member) NeutralMixed::pf_adv_perp_ylow (C++ member) NeutralMixed::Pn (C++ member) NeutralMixed::Pnlim (C++ member) NeutralMixed::precon (C++ function), [1] NeutralMixed::precon_laplacexy (C++ member) NeutralMixed::precondition (C++ member) NeutralMixed::pressure_floor (C++ member) NeutralMixed::pressure_norm (C++ member) NeutralMixed::pressure_source (C++ member) NeutralMixed::sheath_ydown (C++ member) NeutralMixed::sheath_yup (C++ member) NeutralMixed::Sn (C++ member) NeutralMixed::Snv (C++ member) NeutralMixed::sound_speed (C++ member) NeutralMixed::Sp (C++ member) NeutralMixed::temperature_floor (C++ member) NeutralMixed::Tn (C++ member) NeutralMixed::transform_impl (C++ function) NeutralMixed::Vn (C++ member) NeutralParallelDiffusion (C++ struct), [1] NeutralParallelDiffusion::collision_names (C++ member) NeutralParallelDiffusion::diagnose (C++ member) NeutralParallelDiffusion::diagnostics (C++ member) NeutralParallelDiffusion::Diagnostics (C++ struct) NeutralParallelDiffusion::Diagnostics::Dn (C++ member) NeutralParallelDiffusion::Diagnostics::E (C++ member) NeutralParallelDiffusion::Diagnostics::F (C++ member) NeutralParallelDiffusion::Diagnostics::S (C++ member) NeutralParallelDiffusion::diffusion_collisions_mode (C++ member) NeutralParallelDiffusion::dneut (C++ member) NeutralParallelDiffusion::equation_fix (C++ member) NeutralParallelDiffusion::NeutralParallelDiffusion (C++ function) NeutralParallelDiffusion::nu (C++ member) NeutralParallelDiffusion::outputVars (C++ function), [1] NeutralParallelDiffusion::perpendicular_conduction (C++ member) NeutralParallelDiffusion::perpendicular_viscosity (C++ member) NeutralParallelDiffusion::transform_impl (C++ function) NO_DATA_ID_DEFAULT_FOUND (C++ member) NOFLOW_BOUNDARY_H (C macro) NoFlowBoundary (C++ struct), [1] NoFlowBoundary::name (C++ member) NoFlowBoundary::noflow_lower_y (C++ member) NoFlowBoundary::noflow_upper_y (C++ member) NoFlowBoundary::NoFlowBoundary (C++ function) NoFlowBoundary::transform_impl (C++ function)

O

OpenADAS (C++ struct) OpenADAS::calculate_rates (C++ function) OpenADAS::electron_heating (C++ member) OpenADAS::FreqNorm (C++ member) OpenADAS::Nnorm (C++ member) OpenADAS::OpenADAS (C++ function) OpenADAS::radiation_coef (C++ member) OpenADAS::rate_coef (C++ member) OpenADAS::Tnorm (C++ member) OpenADASChargeExchange (C++ struct) OpenADASChargeExchange::calculate_rates (C++ function) OpenADASChargeExchange::FreqNorm (C++ member) OpenADASChargeExchange::Nnorm (C++ member) OpenADASChargeExchange::OpenADASChargeExchange (C++ function) OpenADASChargeExchange::rate_coef (C++ member)

OpenADASChargeExchange::Tnorm (C++ member) OpenADASRateCoefficient (C++ struct) OpenADASRateCoefficient::evaluate (C++ function) OpenADASRateCoefficient::log_coeff (C++ member) OpenADASRateCoefficient::log_density (C++ member) OpenADASRateCoefficient::log_temperature (C++ member) OpenADASRateCoefficient::nmax (C++ member) OpenADASRateCoefficient::nmin (C++ member) OpenADASRateCoefficient::OpenADASRateCoefficient (C++ function) OpenADASRateCoefficient::Tmax (C++ member) OpenADASRateCoefficient::Tmin (C++ member) operator& (C++ function), [1] operator<< (C++ function), [1] operator>> (C++ function), [1] operator| (C++ function), [1] operator~ (C++ function), [1]

P

ParLimiter (C++ type) Permissions (C++ class), [1] Permissions::AccessRights (C++ type), [1] Permissions::bestMatchRights (C++ function) Permissions::canAccess (C++ function), [1] Permissions::checkNoRemainingSubstitutions (C++ function), [1] Permissions::fundamental_regions (C++ member) Permissions::getHighestPermission (C++ function), [1] Permissions::getVariablesWithPermission (C++ function), [1] Permissions::LABEL_RE (C++ member) Permissions::operator<< (C++ function), [1] Permissions::operator= (C++ function), [1] Permissions::operator>> (C++ function), [1] Permissions::Permissions (C++ function), [1], [2], [3], [4] Permissions::regionNames (C++ function), [1] Permissions::setAccess (C++ function), [1], [2] Permissions::substitute (C++ function), [1] Permissions::variable_permissions (C++ member) Permissions::VarRights (C++ struct), [1] Permissions::VarRights::name (C++ member) Permissions::VarRights::rights (C++ member) PermissionTypes (C++ enum) PermissionTypes::END (C++ enumerator) PermissionTypes::Final (C++ enumerator)

PermissionTypes::None (C++ enumerator) PermissionTypes::Read (C++ enumerator) PermissionTypes::ReadIfSet (C++ enumerator) PermissionTypes::Write (C++ enumerator) POLARISATION_DRIFT_H (C macro) PolarisationDrift (C++ struct), [1] PolarisationDrift::advection (C++ member) PolarisationDrift::average_atomic_mass (C++ member) PolarisationDrift::boussinesq (C++ member) PolarisationDrift::Bsq (C++ member) PolarisationDrift::calcDivJ (C++ function), [1] PolarisationDrift::calcMassDensity (C++ function), [1] PolarisationDrift::calcPolFlowPotential (C++ function), [1] PolarisationDrift::density_floor (C++ member) PolarisationDrift::diagnose (C++ member) PolarisationDrift::diagnostics (C++ member) PolarisationDrift::diamagnetic_polarisation (C++ member) PolarisationDrift::diamagneticCompression (C++ function), [1] PolarisationDrift::DivJ (C++ member) PolarisationDrift::outputVars (C++ function), [1] PolarisationDrift::phi_pol (C++ member) PolarisationDrift::phiSolver (C++ member) PolarisationDrift::polarisationAdvection (C++ function), [1] PolarisationDrift::PolarisationDrift (C++ function) PolarisationDrift::transform_impl (C++ function)

Q

QUASINEUTRAL (C macro) Quasineutral (C++ struct), [1] Quasineutral::AA (C++ member) Quasineutral::charge (C++ member) Quasineutral::density (C++ member)

Quasineutral::finally (C++ function), [1] Quasineutral::name (C++ member) Quasineutral::outputVars (C++ function), [1] Quasineutral::Quasineutral (C++ function), [1] Quasineutral::transform_impl (C++ function)

R

RATE_HELPER_H (C macro) REACTION_DATA_H (C macro) REACTION_DIAGNOSTIC_H (C macro) REACTION_H (C macro) REACTION_PARSER_H (C macro) ReactionData (C++ class) ReactionData::data_label (C++ member) ReactionData::eval_sigma_v_ET (C++ function) ReactionData::eval_sigma_v_ET_impl (C++ function) ReactionData::eval_sigma_v_nT (C++ function) ReactionData::eval_sigma_v_nT_impl (C++ function) ReactionData::eval_sigma_v_T (C++ function) ReactionData::eval_sigma_v_T_impl (C++ function) ReactionData::eval_sigma_vE_nT (C++ function) ReactionData::eval_sigma_vE_nT_impl (C++ function) ReactionData::fit_type (C++ member) ReactionData::get_coeffs (C++ function) ReactionData::get_fit_type (C++ function) ReactionData::get_metadata (C++ function) ReactionData::get_type (C++ function) ReactionData::metadata (C++ member) ReactionData::metadata_keys (C++ member) ReactionData::ReactionData (C++ function) ReactionData::set_metadata (C++ function) ReactionData::src_str (C++ function) ReactionData::type (C++ member) ReactionData::~ReactionData (C++ function) ReactionDataFactory (C++ class) ReactionDataFactory::default_type (C++ member) ReactionDataFactory::option_name (C++ member) ReactionDataFactory::section_name (C++ member) ReactionDataFactory::type_name (C++ member) ReactionDataWithCoeffs (C++ class) ReactionDataWithCoeffs::coeffs (C++ member) ReactionDataWithCoeffs::get_coeffs (C++ function) ReactionDataWithCoeffs::ReactionDataWithCoeffs (C++ function) ReactionDiagnostic (C++ struct) ReactionDiagnostic::add_to_state (C++ function) ReactionDiagnostic::conversion (C++ member) ReactionDiagnostic::data (C++ member) ReactionDiagnostic::default_std_name (C++ function) ReactionDiagnostic::get_name (C++ function) ReactionDiagnostic::long_name (C++ member) ReactionDiagnostic::name (C++ member) ReactionDiagnostic::operator= (C++ function), [1] ReactionDiagnostic::ReactionDiagnostic (C++ function), [1], [2], [3] ReactionDiagnostic::set_data (C++ function) ReactionDiagnostic::source (C++ member) ReactionDiagnostic::standard_name (C++ member) ReactionDiagnostic::transform (C++ function) ReactionDiagnostic::transformer (C++ member) ReactionDiagnostic::type (C++ member) ReactionDiagnostic::units (C++ member) ReactionDiagnostic::~ReactionDiagnostic (C++ function) ReactionParser (C++ class) ReactionParser::diff_reactants_products (C++ function) ReactionParser::get_mom_energy_pop_changes (C++ function) ReactionParser::get_product_by_position (C++ function) ReactionParser::get_reactant_by_position (C++ function) ReactionParser::get_reaction_str (C++ function) ReactionParser::get_single_species (C++ function), [1] ReactionParser::get_species (C++ function), [1], [2], [3], [4] ReactionParser::is_symmetric (C++ function) ReactionParser::mom_energy_stoich (C++ member) ReactionParser::ordered_products (C++ member) ReactionParser::ordered_reactants (C++ member) ReactionParser::pop_change (C++ function) ReactionParser::pop_change_product (C++ function) ReactionParser::pop_change_reactant (C++ function) ReactionParser::products (C++ member) ReactionParser::reactants (C++ member) ReactionParser::reaction_str (C++ member) ReactionParser::ReactionParser (C++ function) ReactionParser::stoich (C++ member) ReactionParser::symmetric (C++ member) readIfSet (C++ function), [1] readOnly (C++ function), [1] readWrite (C++ function), [1] recalculate_metric (C++ function), [1] Recycling (C++ struct), [1] Recycling::channels (C++ member) Recycling::density_floor (C++ member) Recycling::density_source (C++ member)

Recycling::diagnose (C++ member) Recycling::energy_flow_xlow (C++ member) Recycling::energy_source (C++ member) Recycling::gamma_i (C++ member) Recycling::has_sheath_boundary_simple (C++ member) Recycling::is_pump (C++ member) Recycling::neutral_pump (C++ member) Recycling::outputVars (C++ function), [1] Recycling::particle_flow_xlow (C++ member) Recycling::pfr_recycle (C++ member) Recycling::pressure_floor (C++ member) Recycling::RecycleChannel (C++ struct) Recycling::RecycleChannel::from (C++ member) Recycling::RecycleChannel::pfr_energy (C++ member) Recycling::RecycleChannel::pfr_fast_recycle_energy_factor (C++ member) Recycling::RecycleChannel::pfr_fast_recycle_fraction (C++ member) Recycling::RecycleChannel::pfr_multiplier (C++ member) Recycling::RecycleChannel::pump_density_source (C++ member) Recycling::RecycleChannel::pump_energy_source (C++ member) Recycling::RecycleChannel::pump_multiplier (C++ member) Recycling::RecycleChannel::sol_energy (C++ member) Recycling::RecycleChannel::sol_fast_recycle_energy_factor (C++ member) Recycling::RecycleChannel::sol_fast_recycle_fraction (C++ member) Recycling::RecycleChannel::sol_multiplier (C++ member) Recycling::RecycleChannel::target_energy (C++ member) Recycling::RecycleChannel::target_fast_recycle_energy_factor (C++ member) Recycling::RecycleChannel::target_fast_recycle_fraction (C++ member) Recycling::RecycleChannel::target_multiplier (C++ member) Recycling::RecycleChannel::target_recycle_density_source (C++ member) Recycling::RecycleChannel::target_recycle_energy_source (C++ member) Recycling::RecycleChannel::to (C++ member) Recycling::RecycleChannel::wall_recycle_density_source (C++ member) Recycling::RecycleChannel::wall_recycle_energy_source (C++ member) Recycling::Recycling (C++ function), [1] Recycling::sol_recycle (C++ member) Recycling::target_recycle (C++ member) Recycling::transform_impl (C++ function) RECYCLING_H (C macro) Regions (C++ enum), [1] Regions::All (C++ enumerator), [1] Regions::Boundaries (C++ enumerator), [1] Regions::Interior (C++ enumerator), [1] Regions::Nowhere (C++ enumerator), [1] RegisterComponent (C++ type) RegisterReactionData (C++ type) RELAX_POTENTIAL_H (C macro) RelaxPotential (C++ struct), [1] RelaxPotential::average_atomic_mass (C++ member) RelaxPotential::bndry_flux (C++ member) RelaxPotential::boussinesq (C++ member) RelaxPotential::Bsq (C++ member) RelaxPotential::collisional_friction (C++ member) RelaxPotential::Curlb_B (C++ member) RelaxPotential::damp_core_vorticity (C++ member) RelaxPotential::diagnose (C++ member) RelaxPotential::diamagnetic (C++ member) RelaxPotential::diamagnetic_polarisation (C++ member) RelaxPotential::DivJcol (C++ member) RelaxPotential::DivJdia (C++ member) RelaxPotential::exb_advection (C++ member) RelaxPotential::exb_advection_simplified (C++ member) RelaxPotential::finally (C++ function), [1] RelaxPotential::hyper_z (C++ member) RelaxPotential::lambda_1 (C++ member) RelaxPotential::lambda_2 (C++ member) RelaxPotential::outputVars (C++ function), [1] RelaxPotential::phi (C++ member) RelaxPotential::phi1 (C++ member) RelaxPotential::phi_boundary_last_update (C++ member) RelaxPotential::phi_boundary_relax (C++ member) RelaxPotential::phi_boundary_timescale (C++ member) RelaxPotential::phi_core_averagey (C++ member) RelaxPotential::phi_dissipation (C++ member) RelaxPotential::phi_sheath_dissipation (C++ member) RelaxPotential::Pi_hat (C++ member) RelaxPotential::poloidal_flows (C++ member) RelaxPotential::RelaxPotential (C++ function), [1] RelaxPotential::sheath_boundary (C++ member) RelaxPotential::transform_impl (C++ function) RelaxPotential::viscosity (C++ member) RelaxPotential::viscosity_par (C++ member) RelaxPotential::Vort (C++ member) RelaxPotential::vort_dissipation (C++ member) replaceAll (C++ function)

S

SCALE_TIMEDERIVS_H (C macro) ScaleTimeDerivs (C++ struct) ScaleTimeDerivs::outputVars (C++ function) ScaleTimeDerivs::ScaleTimeDerivs (C++ function) ScaleTimeDerivs::scaling (C++ member) ScaleTimeDerivs::transform_impl (C++ function) set (C++ function), [1] SET_TEMPERATURE_H (C macro) set_with_attrs (C++ function), [1] setBoundary (C++ function), [1] SetTemperature (C++ struct) SetTemperature::diagnose (C++ member) SetTemperature::name (C++ member) SetTemperature::outputVars (C++ function) SetTemperature::SetTemperature (C++ function) SetTemperature::T (C++ member) SetTemperature::temperature_from (C++ member) SetTemperature::transform_impl (C++ function) SHEATH_BOUNDARY_H (C macro) SHEATH_BOUNDARY_INSULATING_H (C macro) SHEATH_BOUNDARY_SIMPLE_H (C macro) SHEATH_CLOSURE_H (C macro) SheathBoundary (C++ struct) SheathBoundary::always_set_phi (C++ member) SheathBoundary::floor_potential (C++ member) SheathBoundary::Ge (C++ member) SheathBoundary::ion_ee_E_max (C++ member) SheathBoundary::ion_ee_E_th (C++ member) SheathBoundary::ion_ee_gamma_max (C++ member) SheathBoundary::ion_ee_p (C++ member) SheathBoundary::ionSecondaryElectronEmissionGamma (C++ function) SheathBoundary::lower_y (C++ member) SheathBoundary::SheathBoundary (C++ function) SheathBoundary::sin_alpha (C++ member) SheathBoundary::transform_impl (C++ function) SheathBoundary::upper_y (C++ member) SheathBoundary::wall_potential (C++ member) SheathBoundaryInsulating (C++ struct) SheathBoundaryInsulating::gamma_e (C++ member) SheathBoundaryInsulating::Ge (C++ member) SheathBoundaryInsulating::lower_y (C++ member) SheathBoundaryInsulating::SheathBoundaryInsulating (C++ function) SheathBoundaryInsulating::sin_alpha (C++ member) SheathBoundaryInsulating::transform_impl (C++ function) SheathBoundaryInsulating::upper_y (C++ member) SheathBoundarySimple (C++ struct) SheathBoundarySimple::always_set_phi (C++ member) SheathBoundarySimple::density_boundary_mode (C++ member) SheathBoundarySimple::diagnose (C++ member) SheathBoundarySimple::diagnostics (C++ member) SheathBoundarySimple::gamma_e (C++ member) SheathBoundarySimple::gamma_i (C++ member) SheathBoundarySimple::Ge (C++ member) SheathBoundarySimple::hflux_e (C++ member) SheathBoundarySimple::ion_sum (C++ member) SheathBoundarySimple::lower_y (C++ member) SheathBoundarySimple::no_flow (C++ member) SheathBoundarySimple::outputVars (C++ function) SheathBoundarySimple::phi (C++ member) SheathBoundarySimple::pressure_boundary_mode (C++ member) SheathBoundarySimple::sheath_ion_polytropic (C++ member) SheathBoundarySimple::SheathBoundarySimple (C++ function) SheathBoundarySimple::sin_alpha (C++ member) SheathBoundarySimple::temperature_boundary_mode (C++ member) SheathBoundarySimple::transform_impl (C++ function) SheathBoundarySimple::upper_y (C++ member) SheathBoundarySimple::wall_potential (C++ member) SheathClosure (C++ struct) SheathClosure::L_par (C++ member) SheathClosure::offset (C++ member) SheathClosure::sheath_gamma (C++ member) SheathClosure::sheath_gamma_ions (C++ member) SheathClosure::SheathClosure (C++ function) SheathClosure::sinks (C++ member) SheathClosure::transform_impl (C++ function) SIMPLE_CONDUCTION_H (C macro) simple_pump_H (C macro) SimpleConduction (C++ struct), [1] SimpleConduction::boundary_flux (C++ member) SimpleConduction::density (C++ member) SimpleConduction::kappa0 (C++ member) SimpleConduction::name (C++ member) SimpleConduction::Nnorm (C++ member) SimpleConduction::SimpleConduction (C++ function) SimpleConduction::temperature (C++ member) SimpleConduction::Tnorm (C++ member) SimpleConduction::transform_impl (C++ function) SimplePump (C++ struct) SimplePump::diagnose (C++ member) SimplePump::name (C++ member)

SimplePump::Nnorm (C++ member) SimplePump::Omega_ci (C++ member) SimplePump::outputVars (C++ function) SimplePump::pumping_sink (C++ member) SimplePump::residence_time (C++ member) SimplePump::SimplePump (C++ function) SimplePump::sink_shape (C++ member) SimplePump::transform_impl (C++ function) SNB_CONDUCTION_H (C macro) SNBConduction (C++ struct), [1] SNBConduction::diagnose (C++ member) SNBConduction::Div_Q_SH (C++ member) SNBConduction::Div_Q_SNB (C++ member) SNBConduction::Nnorm (C++ member) SNBConduction::Omega_ci (C++ member) SNBConduction::outputVars (C++ function), [1] SNBConduction::rho_s0 (C++ member) SNBConduction::snb (C++ member) SNBConduction::SNBConduction (C++ function), [1] SNBConduction::Tnorm (C++ member) SNBConduction::transform_impl (C++ function) softFloor (C++ function), [1] SOLKIT_HYDROGEN_CHARGE_EXCHANGE_H (C macro) SOLKIT_NEUTRAL_PARALLEL_DIFFUSION_H (C macro) SOLKITHydrogenChargeExchange (C++ struct) SOLKITHydrogenChargeExchange::calculate_rates (C++ function) SOLKITHydrogenChargeExchange::Nnorm (C++ member) SOLKITHydrogenChargeExchange::rho_s0 (C++ member) SOLKITHydrogenChargeExchange::SOLKITHydrogenChargeExchange (C++ function) SOLKITHydrogenChargeExchangeIsotope (C++ struct) SOLKITHydrogenChargeExchangeIsotope::SOLKITHydrogenChargeExchangeIsotope (C++ function) SOLKITHydrogenChargeExchangeIsotope::transform_impl (C++ function) SOLKITNeutralParallelDiffusion (C++ struct) SOLKITNeutralParallelDiffusion::area_norm (C++ member) SOLKITNeutralParallelDiffusion::neutral_temperature (C++ member) SOLKITNeutralParallelDiffusion::SOLKITNeutralParallelDiffusion (C++ function) SOLKITNeutralParallelDiffusion::transform_impl (C++ function) SOUND_SPEED_H (C macro) SoundSpeed (C++ struct) SoundSpeed::alfven_wave (C++ member) SoundSpeed::beta_norm (C++ member) SoundSpeed::electron_dynamics (C++ member) SoundSpeed::fastest_wave_factor (C++ member) SoundSpeed::SoundSpeed (C++ function) SoundSpeed::temperature_floor (C++ member) SoundSpeed::transform_impl (C++ function) sp_data_keys (C++ member) species_filter (C++ enum) species_filter::consumed (C++ enumerator) species_filter::electron (C++ enumerator) species_filter::heavy (C++ enumerator) species_filter::ion (C++ enumerator) species_filter::neutral (C++ enumerator) species_filter::produced (C++ enumerator) species_filter::products (C++ enumerator) species_filter::reactants (C++ enumerator) SPECIES_PARSER_H (C macro) SpeciesInformation (C++ struct) SpeciesInformation::all_species (C++ member) SpeciesInformation::charged (C++ member) SpeciesInformation::electrons (C++ member) SpeciesInformation::finish_construction (C++ function) SpeciesInformation::ions (C++ member) SpeciesInformation::negative_ions (C++ member) SpeciesInformation::neutrals (C++ member) SpeciesInformation::non_electrons (C++ member) SpeciesInformation::positive_ions (C++ member) SpeciesInformation::SpeciesInformation (C++ function), [1] SpeciesParser (C++ class) SpeciesParser::charge (C++ member) SpeciesParser::element (C++ member) SpeciesParser::get_charge (C++ function) SpeciesParser::get_element (C++ function) SpeciesParser::get_str (C++ function) SpeciesParser::ionised (C++ function) SpeciesParser::long_name (C++ function) SpeciesParser::recombined (C++ function) SpeciesParser::species_str (C++ member) SpeciesParser::SpeciesParser (C++ function), [1] split_csv_str (C++ function), [1] Stencil1D (C++ struct) Stencil1D::c (C++ member) Stencil1D::L (C++ member) Stencil1D::m (C++ member) Stencil1D::mm (C++ member) Stencil1D::p (C++ member) Stencil1D::pp (C++ member) Stencil1D::R (C++ member) str_keys (C++ function) subtract (C++ function), [1]

T

temperature_feedback_H (C macro) TemperatureFeedback (C++ struct) TemperatureFeedback::control_target_temperature (C++ member) TemperatureFeedback::diagnose (C++ member) TemperatureFeedback::error (C++ member) TemperatureFeedback::integral_term (C++ member) TemperatureFeedback::name (C++ member) TemperatureFeedback::outputVars (C++ function) TemperatureFeedback::proportional_term (C++ member) TemperatureFeedback::restartVars (C++ function) TemperatureFeedback::scaling_factors_list (C++ member) TemperatureFeedback::source_multiplier (C++ member) TemperatureFeedback::source_shape (C++ member) TemperatureFeedback::species_list (C++ member) TemperatureFeedback::temperature_controller_i (C++ member) TemperatureFeedback::temperature_controller_p (C++ member)

TemperatureFeedback::temperature_error_integral (C++ member) TemperatureFeedback::temperature_error_last (C++ member) TemperatureFeedback::temperature_error_lasttime (C++ member) TemperatureFeedback::temperature_integral_positive (C++ member) TemperatureFeedback::temperature_setpoint (C++ member) TemperatureFeedback::temperature_source_positive (C++ member) TemperatureFeedback::TemperatureFeedback (C++ function) TemperatureFeedback::transform_impl (C++ function) threePointStencil (C++ function) TOSTRING (C macro) toString (C++ function) TOSTRING_ (C macro) Transform (C++ struct) Transform::Transform (C++ function) Transform::transform_impl (C++ function) Transform::transforms (C++ member) TRANSFORM_H (C macro)

U

updateAccessRecords (C++ function) UPSTREAM_DENSITY_FEEDBACK_H (C macro) UpstreamDensityFeedback (C++ struct), [1] UpstreamDensityFeedback::density_controller_i (C++ member) UpstreamDensityFeedback::density_controller_p (C++ member) UpstreamDensityFeedback::density_error_integral (C++ member) UpstreamDensityFeedback::density_error_last (C++ member) UpstreamDensityFeedback::density_error_lasttime (C++ member) UpstreamDensityFeedback::density_integral_positive (C++ member) UpstreamDensityFeedback::density_source_positive (C++ member) UpstreamDensityFeedback::density_source_shape (C++ member)

UpstreamDensityFeedback::density_upstream (C++ member) UpstreamDensityFeedback::diagnose (C++ member) UpstreamDensityFeedback::error (C++ member) UpstreamDensityFeedback::integral_term (C++ member) UpstreamDensityFeedback::name (C++ member) UpstreamDensityFeedback::outputVars (C++ function), [1] UpstreamDensityFeedback::proportional_term (C++ member) UpstreamDensityFeedback::restartVars (C++ function), [1] UpstreamDensityFeedback::source_multiplier (C++ member) UpstreamDensityFeedback::transform_impl (C++ function) UpstreamDensityFeedback::UpstreamDensityFeedback (C++ function), [1]

V

Vorticity (C++ struct), [1] Vorticity::average_atomic_mass (C++ member) Vorticity::bndry_flux (C++ member) Vorticity::Bsq (C++ member) Vorticity::calculateDivJdia (C++ function), [1] Vorticity::calculatePihat (C++ function), [1] Vorticity::collisional_friction (C++ member) Vorticity::Curlb_B (C++ member) Vorticity::damp_core_vorticity (C++ member) Vorticity::diagnose (C++ member) Vorticity::diamagnetic (C++ member) Vorticity::diamagnetic_polarisation (C++ member) Vorticity::DivJcol (C++ member) Vorticity::DivJdia (C++ member) Vorticity::exb_advection (C++ member) Vorticity::exb_advection_simplified (C++ member) Vorticity::finally (C++ function), [1] Vorticity::hyper_z (C++ member) Vorticity::include_viscosity (C++ member) Vorticity::laplacexy (C++ member)

Vorticity::outputVars (C++ function), [1] Vorticity::phi (C++ member) Vorticity::phi_boundary_last_update (C++ member) Vorticity::phi_boundary_relax (C++ member) Vorticity::phi_boundary_timescale (C++ member) Vorticity::phi_core_averagey (C++ member) Vorticity::phi_dissipation (C++ member) Vorticity::phi_sheath_dissipation (C++ member) Vorticity::phiSolver (C++ member) Vorticity::Pi_hat (C++ member) Vorticity::poloidal_flows (C++ member) Vorticity::restartVars (C++ function), [1] Vorticity::sheath_boundary (C++ member) Vorticity::split_n0 (C++ member) Vorticity::transform_impl (C++ function) Vorticity::viscosity (C++ member) Vorticity::viscous_heating (C++ member) Vorticity::Vort (C++ member) Vorticity::vort_dissipation (C++ member) Vorticity::Vorticity (C++ function), [1] VORTICITY_H (C macro)

W

writeBoundary (C++ function), [1] writeBoundaryIfSet (C++ function), [1]

writeBoundaryReadInteriorIfSet (C++ function), [1] writeFinal (C++ function), [1]

Z

ZERO_CURRENT (C macro) ZeroCurrent (C++ struct), [1] ZeroCurrent::charge (C++ member) ZeroCurrent::finally (C++ function), [1]

ZeroCurrent::name (C++ member) ZeroCurrent::outputVars (C++ function), [1] ZeroCurrent::transform_impl (C++ function) ZeroCurrent::velocity (C++ member) ZeroCurrent::ZeroCurrent (C++ function), [1]